The BaseSpace Informatics Suite is a fully integrated, cloud-based informatics platform that unifies key functionality for quickly delivering high-quality genomic information.

To learn more: https://www.illumina.com/informatics.html



  1. Are there any plans to create a “public health’ app for BaseSpace. One that would take fastq files and with only minimal hands on time, output snps and photogenic trees for infectious disease (not HIV, not cancer, not human genome)

    • Hi Nick,

      We currently do not have any apps for infectious disease which output that information. That said, OneCodex (https://www.onecodex.com/) is a tool directly integrated with BaseSpace Sequence Hub. That tool outputs phylogenetic trees, but does not output SNP information.

      Do you have any recommendations for a pipeline to accomplish your needs?


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