This update (BaseMount v0.14) includes: As always, you can install or update BaseMount using the command line More details can be found on the following pages: A series of Important note: If you previously authenticated with an older version of BaseMount, your stored access token may not contain the scope needed for trash operations. Here is a quick example to create a project, move it to the trash and restore it from the trash: Yes, finally! You can now run This is useful if you create entities outside BaseMount (for example if you create a project using the website) and want to use them in an already-mounted BaseMount directory. This command is available in the Projects, Runs and .Trash directories and their sub-directories. Please visit our BaseSpace Google group for inquiries and to submit feedback.
bm-cmd
tool, a shorter alias for basemount-cmd
sudo bash -c "$(curl -L https://basemount.basespace.illumina.com/install)"
Moving BaseSpace Sequence Hub Entities to the Trash
basemount-cmd
operations now allow you to control the trash:
Available in: project, run, sample, appresult and appsession entities
Available in: run entities
Available in: .Trash/{entity-name} directories
To fix this, you need to delete your current configuration (by using basemount --remove-config [--config=<config>]
) and run BaseMount again to re-authenticate.Demo
# Force reauthentication to get TRASH capabilities
# Only needed the first time you use this new version
basemount --remove-config
# Mount your BaseSpace account
mkdir BaseSpace
basemount BaseSpace
# Create new project
cd BaseSpace/Projects
mkdir myNewProject
# Move project to the trash
basemount-cmd --path myNewProject move-to-trash # or simply: rmdir myNewProject
# View project in the trash
ls -ld ../.Trash/myNewProject
# Restore project from the trash
basemount-cmd --path ../.Trash/myNewProject restore-from-trash
Refresh is Here!
basemount-cmd refresh
(or its shorter alias bm-cmd r<tab><tab>
) to force-reload the information shown in your current directory from the BaseSpace Sequence Hub server.Feedback